Index

C

calculate_equivalent_diameter() (in module lcat.featurization.region_properties) calculate_max_intensity() (in module lcat.featurization.region_properties) calculate_mean_intensity() (in module lcat.featurization.region_properties) calculate_min_intensity() (in module lcat.featurization.region_properties) calculate_volume() (in module lcat.featurization.region_properties)

characteristics (lcat.loading.annotations.Nodule attribute) clear_border() (in module lcat.util) compress_nodule_mask() (in module lcat.util) crop_to_box() (in module lcat.util) cubify_scan() (in module lcat.loading.scans)

F

featurize_center() (in module lcat.featurization.body_depth) (in module lcat.featurization.center) featurize_characteristics() (in module lcat.featurization.characteristics)

featurize_region_properties() (in module lcat.featurization.region_properties) featurize_scan() (in module lcat.featurization.registry) featurize_scan_single() (in module lcat.featurization.registry) featurize_tracheal_distance() (in module lcat.featurization.tracheal_distance)

G

get_body_envelope() (in module lcat.segmentation.body) get_body_segmentation() (in module lcat.segmentation.body) get_bounding_box() (in module lcat.util) get_full_nodule_mask() (in module lcat.util) get_largest_volume() (in module lcat.segmentation.body) (in module lcat.segmentation.lungs) get_lung_envelope() (in module lcat.segmentation.lungs) get_lung_segmentation() (in module lcat.segmentation.lungs) get_mask_region() (in module lcat.loading.annotations)

get_nodule_information() (in module lcat.loading.annotations) get_read_characteristics() (in module lcat.loading.annotations) get_read_mask() (in module lcat.loading.annotations) get_read_nodule_id() (in module lcat.loading.annotations) get_scaling_factors() (in module lcat.loading.scans) get_seed_boundary() (in module lcat.analysis.tracheal_distance) get_single_value() (in module lcat.loading.images) get_top_value() (in module lcat.segmentation.body) (in module lcat.segmentation.lungs) get_tracheal_distances() (in module lcat.analysis.tracheal_distance)

I

image_from_mask() (in module lcat.util)

interpolate_array() (in module lcat.loading.scans) interpolate_array_by_axis() (in module lcat.loading.scans)

L

lcat (module) lcat.analysis (module) lcat.analysis.tracheal_distance (module) lcat.featurization (module) lcat.featurization.body_depth (module) lcat.featurization.center (module) lcat.featurization.characteristics (module) lcat.featurization.region_properties (module) lcat.featurization.registry (module) lcat.featurization.tracheal_distance (module)

lcat.loading (module) lcat.loading.annotations (module) lcat.loading.images (module) lcat.loading.scans (module) lcat.segmentation (module) lcat.segmentation.body (module) lcat.segmentation.lungs (module) lcat.util (module) load_folder() (in module lcat.loading.images) load_radiologist_annotations() (in module lcat.loading.annotations) load_scan() (in module lcat.loading.scans)

M

main() (in module lcat.loading.annotations)

mark_region() (in module lcat.loading.annotations) mask (lcat.loading.annotations.Nodule attribute)

N

Nodule (class in lcat.loading.annotations)

nodule_id (lcat.loading.annotations.Nodule attribute) nodules (lcat.loading.scans.Scan attribute)

O

origin (lcat.loading.annotations.Nodule attribute)

P

patient_id (lcat.loading.scans.Scan attribute)

plot_slices() (in module lcat.util)

R

register_featurizer() (in module lcat.featurization.registry)

rescale_nodule() (in module lcat.loading.scans)

S

save_slices() (in module lcat.util)

Scan (class in lcat.loading.scans)

U

unit_cell (lcat.loading.scans.Scan attribute)

V

voxels (lcat.loading.scans.Scan attribute)

Z

zoom_array() (in module lcat.loading.scans)